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Software update

Last month a bunch of software I recently used got updated  :

GATK 1.6 

This new version came few time (2 month) after last version. A lot of promise concerning indel handling, i am eager to test it by my self.

GCTA 1.0

Add the conditional and joint GWAS  analysis  option, presented Yang et al. The source code is not available (sigh).

MAGMA 1.2

This library allow to easily use GPU for computation.  A fair amount of lapack subroutine are already available. I unfortunately had more difficulties to set-up this version then the previous one. But this project definitely deserve attention.

LLVM 3.1

This free compiler is hip ! Fortran compilation are recently available (with dragon egg), and more and more group are having an eye on it (e.g. nvidia freebsd), so I guess we should keep an eye on it too !

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Categories: Linux
  1. AL
    June 7, 2012 at 1:09 pm

    Not really new, but take a look at http://nce.ads.uga.edu/wiki/doku.php?id=start

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