Home > Linux > Software update

Software update

Last month a bunch of software I recently used got updated  :

GATK 1.6 

This new version came few time (2 month) after last version. A lot of promise concerning indel handling, i am eager to test it by my self.

GCTA 1.0

Add the conditional and joint GWAS  analysis  option, presented Yang et al. The source code is not available (sigh).


This library allow to easily use GPU for computation.  A fair amount of lapack subroutine are already available. I unfortunately had more difficulties to set-up this version then the previous one. But this project definitely deserve attention.

LLVM 3.1

This free compiler is hip ! Fortran compilation are recently available (with dragon egg), and more and more group are having an eye on it (e.g. nvidia freebsd), so I guess we should keep an eye on it too !

Categories: Linux
  1. AL
    June 7, 2012 at 1:09 pm

    Not really new, but take a look at http://nce.ads.uga.edu/wiki/doku.php?id=start

  1. No trackbacks yet.

Leave a Reply

Fill in your details below or click an icon to log in:

WordPress.com Logo

You are commenting using your WordPress.com account. Log Out /  Change )

Google+ photo

You are commenting using your Google+ account. Log Out /  Change )

Twitter picture

You are commenting using your Twitter account. Log Out /  Change )

Facebook photo

You are commenting using your Facebook account. Log Out /  Change )


Connecting to %s

%d bloggers like this: