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Software update

April’s quick review of software’s updates :

GATK 2.5

Still some speed improvement, our bug got finally fixed ! Just wonder how broad’s staff will manage to make Haplotype Caller faster than Unified genotyper ! Wait and see.

BWA 0.7.4

After some small bugs, this version offer the same stability for BWA-MEM than for BWA-backtrack, nice to hear.

Picard-Tools 1.90

Still on the same releases rhythm.

IGV 2.3

The motif finder is a very nice new feature.

VEP

Not really an update, but ensembl 71 added sift score for cow.

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Categories: Linux, NGS
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  1. August 12, 2013 at 6:31 pm

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