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Software update

Another month, another software update

samtools 0.1.19

I missed it in the last posts (this version was released in March). Multi-thread is now available. I play a bit with the the different displays (Html, Curse and Text) of tview, (pretty handy). I may need more time to get acustomed to bamcheck/plot-bamcheck output.

Delly 0.0.11

Some small fixes, a new progress bar to control process, better temporary file handling, and BWA-mem support…more here

BWA 0.7.5a

Several small fixes

Picard tools 1.93

Small bug fixes. Released some hours ago (I had to compensate samtools glitch)

llvm 3.3

Still some efficiency enhancement, clang is now totally C++11 complient. New Arch support…and more. Release announcement is still pending, but binary are already available.

GCTA

Apparently computing speed improvement are the newsworthy point of this release.

Coming soon…

I’ve had access to both next cuda 5.5 RC and Intel compiler….and so far the good new is that both now offer a simplified install procedure. Cuda 5.5 is available as a deb file, Intel compiler as a script with a GUI. I am eager to test these RC.

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