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Software update

So what are the last noticeable update of this latest months ?

GATK 2.6-5

At last HaplotypeCaller is now a real alternative for Big project ! <grumpy> The bad thing <\grumpy> is that now GATK need java7, which is still not so common nowadays and (thanks to oracle) no that easy to install !

I am actually running it on a batch of 100 bulls  @12&+X(so far so good, I will complete a whole genome variant calling in 2 weeks).

Beagle 4
Now allowing imputation ! And this just make everything so simple !

eigenstrat

This tool has been released in its 5.0 version.

TexLive2013

This is the yearly release. Not a lot of new things but it’s always worthy to upgrade.

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Categories: emacs, Linux, NGS
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