Home > emacs, Linux, NGS > Software update

Software update

Picards tools

The classical one 😉  Note that some changes were done for java 7 compatibility. So, after GATK, turning to java 7 as default may be on its way.

Beagle 4

Another update (r1128), not documented so far.

Minimac

The new version now use all variants in the reference panel (snp, indels, SV)

Open MP

The openmp specification 4.0 are out ! Now support Fortran2003 and prepare the support for accelerator. Note the next intel compiler version already support a large number of the new specifications.

Magma

This library now in its version 1.4 . Support for new GPUs were added as well as additional subroutines. I wish more Fortran interface were added…maybe next time !

Cuda 5.5

As previously mentioned, the last version of cuda is now available as rpm/deb package (allowing a much easier install).

Advertisements
Categories: emacs, Linux, NGS
  1. No comments yet.
  1. No trackbacks yet.

Leave a Reply

Fill in your details below or click an icon to log in:

WordPress.com Logo

You are commenting using your WordPress.com account. Log Out / Change )

Twitter picture

You are commenting using your Twitter account. Log Out / Change )

Facebook photo

You are commenting using your Facebook account. Log Out / Change )

Google+ photo

You are commenting using your Google+ account. Log Out / Change )

Connecting to %s

%d bloggers like this: