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Software update

Picards tools

The classical one 😉  Note that some changes were done for java 7 compatibility. So, after GATK, turning to java 7 as default may be on its way.

Beagle 4

Another update (r1128), not documented so far.


The new version now use all variants in the reference panel (snp, indels, SV)

Open MP

The openmp specification 4.0 are out ! Now support Fortran2003 and prepare the support for accelerator. Note the next intel compiler version already support a large number of the new specifications.


This library now in its version 1.4 . Support for new GPUs were added as well as additional subroutines. I wish more Fortran interface were added…maybe next time !

Cuda 5.5

As previously mentioned, the last version of cuda is now available as rpm/deb package (allowing a much easier install).

Categories: emacs, Linux, NGS
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