Home > Linux, NGS, QTL-detection, SNP > Software update

Software update

Picards tools

The classical one 😉

GATK 2.7-4

A new experimental feature to assess PK for reference site. Plus some bug fixing

Shapeit2

A new version of the algorithm. Shortened arguments flags. New sides tools (data checking and graph handling).

GCTA

A new version released 2.12 :  faster and with additional feature. Note a GCTA forum is now available for discussion and technical problem.

Beagle4

A more flexible way to define reference population and the way data are handled. Multi-threading available during sampling step.

Delly 0.12

Apart from translocation detection removal (not for long ?), this version ship a lot of awaited features like vcf output.

Varscan 2.3.6

Still some work on vcf compatibility improvement.

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Categories: Linux, NGS, QTL-detection, SNP
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